Protein Information Crawler (PIC): extensive spidering of multiple protein information resources for large protein sets.
نویسنده
چکیده
UNLABELLED Proteomic studies often produce sets of hundreds of proteins. Bioinformatic information for these large protein sets must be collected from multiple online resources. Protein Information Crawler (PIC) automatically bulk-collects such data from multiple databases and prediction servers, based on National Center for Biotechnology Information (NCBI) gi numbers or accession numbers, and summarizes them in a Microsoft Excel spreadsheet and/or HTML table. PIC greatly accelerates information procurement, helps to build customized protein information databases and drastically reduces manual database investigation in extensive proteomic studies. AVAILABILITY http://www.zoo.uni-heidelberg.de/mfa/PIC.
منابع مشابه
Allelic diversity and association analysis for grain quality traits in exotic rice genotypes
The present research aims to study the association and allelic diversity of linked microsatellite markers to grain quality QTLs of 84 exotic rice genotypes. To this end, 9 microsatellite markers (RM540, RM539, RM587, RM527, RM216, RM467, RM3188, RM246, RM5461) were used in which a total of 61 alleles were identified with a mean of 6 alleles per locus. The polymorphism information content (PIC) ...
متن کاملProtein Secondary Structure Prediction: a Literature Review with Focus on Machine Learning Approaches
DNA sequence, containing all genetic traits is not a functional entity. Instead, it transfers to protein sequences by transcription and translation processes. This protein sequence takes on a 3D structure later, which is a functional unit and can manage biological interactions using the information encoded in DNA. Every life process one can figure is undertaken by proteins with specific functio...
متن کاملExpression and Purification of Recombinant Outer Surface Protein D of Borrelia burgdorferi
To carry out the immunological experiments on the serum of Multiple Sclerosis (MS) patients, based on a correlation between Borrelia burgdorferi infection and contracting MS autoimmune disease the outer surface protein D (OspD) of the bacterium was expressed and purified. A clone containing the OspD gene in pET11a expression vector under the control of T7 promoter was transformed to the bacteri...
متن کاملP20: The Role of Protein Kinases in Memory
When an experience is encrypted into a long-lasting memory, it is believed that specific sets of neurons in the brain of the animal undergo changes including the strengthening of preexisting synapses and the growth and maintenance of new synaptic connections. These activity-dependent synaptic changes appear to require the coordination of a variety of cellular processes in spatially separated ce...
متن کاملAb initio study of the second virial coefficient protein — protein on the basis of intermolecular potential energy surface
Intermolecular potential energy surface (IPS) for protein — protein has been examined using RHF, DFT-B3LYPand MP2 levels of theory with 6-31G, 6-31G* basis sets. A number of basis sets were used in order to evaluatethe basis set effects, at all three levels of theory, basis sets has significant effects on the calculated potentialenergy curves (including position, depth and width of the potentia...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Proteomics
دوره 8 1 شماره
صفحات -
تاریخ انتشار 2008